YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CNR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGCRELELT NGSNGGLEFN PMKEYMILSD AQQIAVAVLC TLMGLLSALE NVAVLYLILS  60
   61 SQRLRRKPSY LFIGSLAGAD FLASVIFACN FVIFHVFHGV DSRNIFLLKI GSVTMTFTAS 120
  121 VGSLLLTAVD RYLCLCYPPT YKALVTRGRA LVALGVMWVL SALISYLPLM GWTCCPSPCS 180
  181 ELFPLIPNDY LLGWLLFIAI LFSGIIYTYG YVLWKAHQHV ASLAEHQDRQ VPGIARMRLD 240
  241 VRLAKTLGLV MAVLLICWFP ALALMGHSLV TTLSDKVKEA FAFCSMLCLV NSMINPIIYA 300
  301 LRSGEIRSAA QHCLTGWKKY LQGLGSEGKE EAPKSSVTET EAEVKTTTGP GSRTPGCSNC 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.94
Transmembrane Helix	34	59	0.86
Cytoplasmic	60	69	0.95
Transmembrane Helix	70	94	0.88
Non-Cytoplasmic	95	105	0.80
Transmembrane Helix	106	129	0.86
Cytoplasmic	130	149	0.83
Transmembrane Helix	150	170	0.91
Non-Cytoplasmic	171	190	0.93
Transmembrane Helix	191	213	0.92
Cytoplasmic	214	245	0.94
Transmembrane Helix	246	265	0.94
Non-Cytoplasmic	266	279	0.81
Transmembrane Helix	280	301	0.89
Cytoplasmic	302	360	0.95