YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTNLE_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH  60
   61 KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH LLSLLCHISI LALGGLFLWS 120
  121 NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL 180
  181 WIISVVGNWF NFLTLVYICF VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL 240
  241 SKIPIASLKA KAKLG

Type	Start	End	Confidence
Cytoplasmic	1	78	0.95
Transmembrane Helix	79	94	0.87
Non-Cytoplasmic	95	100	0.59
Transmembrane Helix	101	122	0.87
Cytoplasmic	123	172	0.87
Transmembrane Helix	173	200	0.79
Non-Cytoplasmic	201	255	0.76