YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149022153
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGILAWFWN ERFWLPHNVT WADLKNTEEA TFPQAEDLYL AFPLAFCIFM VRLIFERFIA  60
   61 KPCAVALNIQ ANGPQIAQPN AILEKVFTAI TKHPDEKRLE GLSKQLDWDV RSIQRWFRQR 120
  121 RNQEKPSTLT RFCESMWRFS FYLYVFSYGV RFLKQTPWLW NTRHCWYNYP YQPLTADLHY 180
  181 YYILELSFYW SLMVSQFTDI KRKDFGIMFL HHLATIFLIT FSYVNNMARV GTLVLCLHDS 240
  241 ADALLEAAKM ANYAKFQKMC DLLFVMFAVV FITTRLGIFP LWVLNTTLFE SWEIVGPYPS 300
  301 WWVFNLLLLL LQGLNCFWSY LIVKIACKTV SKGKVSKDDR SDIESSSDDE DSEPPGKKLH 360
  361 SSTTTNGTSG TNGYLLTGPC SMDD

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.58
Transmembrane Helix	38	55	0.47
Cytoplasmic	56	138	0.84
Transmembrane Helix	139	153	0.56
Non-Cytoplasmic	154	204	0.49
Transmembrane Helix	205	224	0.60
Cytoplasmic	225	261	0.72
Transmembrane Helix	262	283	0.91
Non-Cytoplasmic	284	300	0.91
Transmembrane Helix	301	322	0.92
Cytoplasmic	323	384	0.97