YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149017097, gi...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKQQSEDD VRRLFEAFGN IEECTILRGP DGNSKGCAFV KYSSHAEAQA AINALHGSQT  60
   61 MPGASSSLVV KFADTDKERT MRRMQQMAGQ MGMFNPMAIP FGAYGAYAQA LMQQQAALMA 120
  121 SVAQGGYLNP MAAFAAAQMQ QMAALNMNGL AAAPMTPTSG GSTPPGITAP AVPSIPSPIG 180
  181 VNGFTGLPPQ ANGQPAAEAV FANGIHPYPA QSPTAADPLQ QAYAGVQQYA GPAAYPAAYG 240
  241 QISQAFPQPP PMIPQQQREG PEGCNLLIYH LPQEFGDAEL MQMFLPFGFV SFDNPASAQT 300
  301 AIQAMNGFQI GMKRLKVQLK RPKDANRPY

Type	Start	End	Confidence
Cytoplasmic	1	86	0.91
Transmembrane Helix	87	108	0.83
Non-Cytoplasmic	109	116	0.78
Transmembrane Helix	117	137	0.53
Cytoplasmic	138	329	0.51