YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PX11D_ARATH
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTLDVSRA ELALVVMYLN KAEARDKLCR AIQYGSKFLS GGQPGTAQNV DKSTSLARKV  60
   61 FRLFKFVNDL HGLISPVPKG TPLPLVLLGK SKNALLSTFL FLDQIVWLGR SGIYKNKERA 120
  121 ELLGRISLFC WMGSSVCTTL VEVGEMGRLS SSMKKIEKGL KNGNKYQDED YRAKLKKSNE 180
  181 RSLALIKSAM DIVVAAGLLQ LAPTKITPRV TGAFGFITSI ISCYQLLPTR PKIKTP

Type	Start	End	Confidence
Cytoplasmic	1	182	0.72
Transmembrane Helix	183	202	0.68
Non-Cytoplasmic	203	209	0.76
Transmembrane Helix	210	228	0.80
Cytoplasmic	229	236	0.77