YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	42	0.91
Non-Cytoplasmic	43	81	0.97
Transmembrane Helix	82	102	0.88
Cytoplasmic	103	112	0.73
Transmembrane Helix	113	132	0.91
Non-Cytoplasmic	133	138	0.55
Transmembrane Helix	139	157	0.92
Cytoplasmic	158	167	0.76
Transmembrane Helix	168	189	0.90
Non-Cytoplasmic	190	199	0.75
Transmembrane Helix	200	220	0.93
Cytoplasmic	221	280	0.97
Transmembrane Helix	281	303	0.87
Non-Cytoplasmic	304	315	0.82
Transmembrane Helix	316	339	0.91
Cytoplasmic	340	345	0.95
Transmembrane Helix	346	367	0.88
Non-Cytoplasmic	368	380	0.76
Transmembrane Helix	381	400	0.94
Cytoplasmic	401	418	0.80
Transmembrane Helix	419	440	0.92
Non-Cytoplasmic	441	447	0.75
Transmembrane Helix	448	469	0.92
Cytoplasmic	470	507	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVISSNGN SKSFDAKMTV YVFICVIIAA VGGLIFGYDI GISGGVTAMD DFLKEFFPSV  60
   61 YERKKHAHEN NYCKYDNQFL QLFTSSLYLA ALVASFFASA TCSKLGRRPT MQLASIFFLI 120
  121 GVGLAAGAVN IYMLIIGRIL LGFGVGFGNQ AVPLFLSEIA PARLRGGLNI VFQLMVTIGI 180
  181 LIANIVNYFT SSIHPYGWRI ALGGAGIPAL ILLFGSLLIC ETPTSLIERN KTKEGKETLK 240
  241 KIRGVEDVDE EYESIVHACD IARQVKDPYT KLMKPASRPP FVIGMLLQFF QQFTGINAIM 300
  301 FYAPVLFQTV GFGNDAALLS AVVTGTINVL STFVGIFLVD KTGRRFLLLQ SSVHMLICQL 360
  361 VIGIILAKDL DVTGTLARPQ ALVVVIFVCV YVMGFAWSWG PLGWLIPSET FPLETRTEGF 420
  421 ALAVSCNMFF TFVIAQAFLS MLCAMKSGIF FFFSGWIVVM GLFALFFVPE TKGVSIDDMR 480
  481 DSVWKLHWYW KRFMLEEDEH DVEKRTD