YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4926820, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFSDAGGA FARRRRDVPK LLQFSCLSSA SRKLFVPFCH SPDHHSASFL LSVLVVRDPL  60
   61 FRLPRTSSPI WSSNLLDTLD ETYPVVLLTR CLKAKSAKMV DLELNLSPAP RSMKPSCSAT 120
  121 LIDQRSHWVL ESLVPVTKLS TNGSTLIHQT NWYRCLSPLS PPVPHPSAVT LSTPIFCSPS 180
  181 SSRHTQSLIA HAKRKLGFSV LGLFQFGPSS SLSWQIHLFG PLRCLKPNSN RCDPNQFLQK 240
  241 SRFNRKSYLS IISQRWCRYL KPVFHGQQLE HIRSMLLCWY NYISRTLPFE APREIFHKTK 300
  301 RVKKNGTMIP SPQSGDYRSF FNSSSPLPLI IELVHVQIIK FKDSSQIFKS LKKNGIITAF 360
  361 PWKSGYRSIL NLFYPAASSL EFVSKSSYAL FARAVYDHPL VEDFAKLVFL VESAIVSTNF 420
  421 STIANFLKVN IPLENSWNLY LSFCCIIVAC INFPLLRP

Type	Start	End	Confidence
Non-Cytoplasmic	1	436	0.79
Transmembrane Helix	437	456	0.83
Cytoplasmic	457	458	0.65