YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FD4L2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSLQTKYT LNPITNNIPR SHRPSFLRVT STTNSQPNHE MKLVVEQRLV NPPLSNDPTL  60
   61 QSTWTHRLWV AAGCTTVFVS FSKSIIGAFG SHLWLEPSLA GFAGYILADL GSGVYHWATD 120
  121 NYGDESTPLV GIHIEDSQDH HKCPWTITKR QFANNLHFMA RGTTLIVLPL DLAFDDHVVH 180
  181 GFVSMFAFCV LFCQLFHAWA HGTKSKLPPL VVGLQDIGLL VSRIHHMNHH RAPYNNNYCV 240
  241 VSGVWNKVLD ESNVFKAMEM VLYIQLGVRP RSWTEPNYE

Type	Start	End	Confidence
Cytoplasmic	1	67	0.76
Transmembrane Helix	68	90	0.73
Non-Cytoplasmic	91	177	0.60
Transmembrane Helix	178	199	0.91
Cytoplasmic	200	279	0.90