YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CTR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.95
Transmembrane Helix	37	57	0.91
Non-Cytoplasmic	58	67	0.79
Transmembrane Helix	68	89	0.92
Cytoplasmic	90	99	0.88
Transmembrane Helix	100	121	0.85
Non-Cytoplasmic	122	163	0.90
Transmembrane Helix	164	184	0.92
Cytoplasmic	185	192	0.81
Transmembrane Helix	193	211	0.95
Non-Cytoplasmic	212	251	0.93
Transmembrane Helix	252	275	0.85
Cytoplasmic	276	287	0.91
Transmembrane Helix	288	310	0.88
Non-Cytoplasmic	311	339	0.88
Transmembrane Helix	340	365	0.88
Cytoplasmic	366	384	0.95
Transmembrane Helix	385	404	0.95
Non-Cytoplasmic	405	411	0.77
Transmembrane Helix	412	433	0.90
Cytoplasmic	434	491	0.97
Transmembrane Helix	492	515	0.89
Non-Cytoplasmic	516	522	0.85
Transmembrane Helix	523	544	0.94
Cytoplasmic	545	552	0.93
Transmembrane Helix	553	575	0.92
Non-Cytoplasmic	576	582	0.82
Transmembrane Helix	583	601	0.95
Cytoplasmic	602	657	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPCRAVLTF TRCLIRRKIV TLDSLEDSKL CRCLTTMDLI ALGVGSTLGA GVYVLAGEVA  60
   61 KADSGPSIVV SFLIAALASV MAGLCYAEFG ARVPKTGSAY LYTYVTVGEL WAFITGWNLI 120
  121 LSYVIGTSSV ARAWSGTFDE LLNKQIGQFF KTYFKMNYTG LAEYPDFFAV CLVLLLAGLL 180
  181 SFGVKESAWV NKFFTAINIL VLLFVMVAGF VKGNVANWKI SEEFLKNISA SAREPPSENG 240
  241 TSIYGAGGFM PYGFTGTLAG AATCFYAFVG FDCIATTGEE VRNPQKAIPI GIVTSLLVCF 300
  301 MAYFGVSAAL TLMMPYYLLD EKSPLPVAFE YVGWGPAKYV VAAGSLCALS TSLLGSMFPL 360
  361 PRILFAMARD GLLFRFLARV SKRQSPVAAT MTAGVISAVM AFLFDLKALV DMMSIGTLMA 420
  421 YSLVAACVLI LRYQPGLCYE QPKYTPEKDI LESCTNATSK SESQVTMLQG QGFSLRTLFN 480
  481 PSALPTRQSA SLVSFLVGFL AFLIAGLSIL TTYGVQAIAR LEAWSLALLA LFLVLCAAVI 540
  541 LTIWRQPQNQ QKVAFMVPFL PFLPAFSILV NIYLMVQLSA DTWVRFSIWM VLGFLIYFAY 600
  601 GIRHSLEGNP RDEEEDEDVC PDNVNAAAEE KSAMQANDHH QRNLSLPFIL HEKTSEC