YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149018355
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGPQWPAP RSLPALCAAL LLLALQPPPV RAEGKLFVLD SQNGSQGLDL ETARQSCKSR  60
   61 GAHLVSAGEL KRVVQDCASA VCTTGWLADG TLGTTVCSKG SGEQPVLRAI DVTIDSHPVP 120
  121 GAKYNALCIK DEERPCGDPP SFPHTILQGR TGLEMGDELL YVCVPGSVTG HRETAFTLLC 180
  181 NSCGEWYGLV QACGKDEAEA HIDYEENFPD DRSVSFRELM EDSRAEGEKE KAQEDASDET 240
  241 PKQDRLVFTS VSKENIAQEK AFVPTTGLPG AGSSFHTDWP RSRLHRKYSL WFPAETFHKS 300
  301 ELEKDVDDET KEPLPARDTH SDEKPAPEES ETRLVYATTY SPSEPFADRN DSKAEDIGVS 360
  361 SSDDSWLDGY PVTDGAWRKV EAGQEDDEDK GDGSVGPDDS VLMSPDQPIK NVTVISSESV 420
  421 IYSSISPSQM LDVEALVPGP INVSETERPH TGDADLTNYQ STIPRRVTTQ QSPMATSPSE 480
  481 LTTSTTQETV LTTLQPTHKH SPSSNVEATQ PPAEVTAPEV QDNFPYLLSE DFLGQEGPGP 540
  541 GASEERLLPT LAPCVGDECP SFRKGPVIAT IVTVLCLLFL LAVSGAVWGY RRCQHKSSVY 600
  601 KLNVGQRQAR HYHQQIEMEK V

Type	Start	End	Confidence
Signal Peptide	1	32	0.99
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	566	0.99
Transmembrane Helix	567	590	0.90
Cytoplasmic	591	621	0.97