YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20198172, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNSLDVGVP WIMCQQDDAP QPMYHGHTNF DRTAGGPFIT TTYDYDAPLD EFGNLNQPKY  60
   61 GHLKQLHDVF HAMEKTLTYG NISTADFGNL VMTTVYQTEE GSSCFIGNVN AKINFQGTSY 120
  121 DVPAWYVSIL PDCKTESYNT AKRMKLRTSL RFKNVSNDES DFLWYMTTVN LKEQDPAWGK 180
  181 NMSLRINSTA HVLHGFVNGQ HTGNYRVENG KFHYVFEQDA KFNPGVNVIT LLSVTVDLPN 240
  241 YGAFFENVPA GITGPVFIIG RNGDETVVKY LSTHNGATKL TIFKAPLGSE PVVVDLLGFG 300
  301 KGKASINENY TGRYWPDPPV LLRFSTHLLH NWVLASSPYR YVMSELISQY AKNLAIILKH 360
  361 LSNITLARTR VQALSRVVLF GPVRFTTLTT FTTPLGLLTM AICSSIDSSL EELSIIFDLT 420
  421 CTKMLYSFWL KALKELLSIK PIDPFIYLFI YLMLALWNAP YGCIVNFWI

Type	Start	End	Confidence
Non-Cytoplasmic	1	444	0.64
Transmembrane Helix	445	468	0.78
Cytoplasmic	469	469	0.41