YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157817384, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLVAAAYTI ALRYTRTTAE GLYFSTTAVC ITEVIKLLIS VGLLAKETGS LGRFKASLSE  60
   61 NVLGSPKELL KLSVPSLVYA VQNNMAFLAL SNLDAAVYQV TYQLKIPCTA LCTVLMLNRS 120
  121 LSKLQWISVF MLCGGVTLVQ WKPAQATKVV VAQNPLLGFG AIAIAVLCSG FAGVYFEKVL 180
  181 KSSDTSLWVR NIQMYLSGIA VTLAGTYLSD GAEIKEKGFF YGYTYYVWFV IFLASVGGLY 240
  241 TSVVVKYTDN IMKGFSAAAA IVLSTVASVI LFGLQITLSF TLGALLVCVS IYLYGLPRQD 300
  301 TTSIQQETTS KERIIGV

Type	Start	End	Confidence
Cytoplasmic	1	123	0.82
Transmembrane Helix	124	144	0.88
Non-Cytoplasmic	145	155	0.84
Transmembrane Helix	156	176	0.95
Cytoplasmic	177	186	0.90
Transmembrane Helix	187	208	0.86
Non-Cytoplasmic	209	223	0.82
Transmembrane Helix	224	244	0.93
Cytoplasmic	245	253	0.74
Transmembrane Helix	254	272	0.91
Non-Cytoplasmic	273	277	0.58
Transmembrane Helix	278	296	0.85
Cytoplasmic	297	317	0.80