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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5281040, gi|7...
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFTLQRPKP KKKLTWTKKA FSGLIFLIVT AGFIISFTST NFPHAPTRLL DCTDSSSSPL  60
   61 CASRNFLFNK QQPRPIPKHD PKPNTKNHDH VSDTPNHPLD PLTVSEINKI RSILSSHALF 120
  121 TSGTPHALHT VVLEEPEKNL VRHWEKGNPL PPRKASVIAR VGADTHVLTV DISTGRVDSE 180
  181 NSPVRVSGYP MMTIEEMNDI TVVPFSNADF NRTIISRGVN LTDVICFPIS CGWFGNKEEN 240
  241 ARVIKSQCFM TQGTPNFYMR PIEGLTILID LDTKQVIEIT DTGRAIPIPG STNTDYRFQK 300
  301 LATTDKTRPL NPISIEQPRG PSFVIEDNHL VKWANWEFHL KPDPRAGVVI SRVRVHDPDT 360
  361 HETRDVMYKG FVSELFVPYM DPSDAWYFKT YMDAGEYGFG LQAMPLVPLN DCPRNAAYMD 420
  421 GVFAAADGTP FVRENMVCIF ESYAGDIGWR HSESPITGIP IREVRPKVTL VVRMAASVGN 480
  481 YDYIIDYEFQ TDGLIKAKVG LSGILMVKGT TYQNKNQVEK DKDGNEEELH GTLLSENVIG 540
  541 VIHDHYVTFY LDLDVDGPDN SFVKVNLKRQ ETEPGESPRK SYLKAVRNIA KTEKDGQIKL 600
  601 SLYDPSEFHV INSGKTTRVG NPTGYKVVPR TTAASLLDHD DPPQKRGAFT NNQIWVTPYN 660
  661 KSEQWAGGLF TYQSHGDDTL AVWSDRDRDI ENKDIVVWYT LGFHHIPCQE DFPIMPTVSS 720
  721 SFDLKPVNFF ERNPILSAAP NFEHDLPVCG VQSVSA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle