YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6523038, gi\|1...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGVVLVS SSIVRPVNSS QSGRTKIHLT PFDLSLLQFD YPQRGLLFSK PDSDFHLIIS  60
   61 RLKDSLSLAL EIYFPFAGRL VKTENLEDDT VSFFIDCDGS GARFLHTEAK SVSVSDILQP 120
  121 DGSVPDFLKY FFPADDFKSC DGVSLPLLVI QVTEMKDGVF ISFCYNHMVA DGVSMWSFFD 180
  181 TWSKICSTGS CFNYKPLVLK GWFLEGIDYP IHVPVSEAER SPPSREPSSV PITKEWIFHF 240
  241 TKKNISDLKA KANSEIASSS DLEVSSLQAV SAHMWRSIIR HSGVSREQKT HCRLVVDLRQ 300
  301 RVNPPLEKDC FGNMVYLSSA ITTVEELLDR GLGEAALQIR KLVSSQTNET CKSFAEDWVR 360
  361 NIKNLNSGIG SKVGNTIVIA SSPRFEVYNK DFGWGKPIAI RAGPSNSING KLSVFQGISE 420
  421 GSIDVQAILW GDVIVKLLAD LEFLEHVTIA

Type	Start	End	Confidence
Signal Peptide	1	19	0.74
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	450	0.99