YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148833298
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	126	0.97
Transmembrane Helix	127	149	0.88
Non-Cytoplasmic	150	192	0.82
Transmembrane Helix	193	212	0.69
Cytoplasmic	213	225	0.76
Transmembrane Helix	226	245	0.84
Non-Cytoplasmic	246	252	0.76
Transmembrane Helix	253	274	0.93
Cytoplasmic	275	390	0.88
Transmembrane Helix	391	414	0.91
Non-Cytoplasmic	415	720	0.85
Transmembrane Helix	721	736	0.61
Cytoplasmic	737	750	0.52
Transmembrane Helix	751	771	0.67
Non-Cytoplasmic	772	782	0.82
Transmembrane Helix	783	804	0.82
Cytoplasmic	805	830	0.81
Transmembrane Helix	831	858	0.79
Non-Cytoplasmic	859	878	0.78
Transmembrane Helix	879	897	0.83
Cytoplasmic	898	913	0.66
Transmembrane Helix	914	938	0.89
Non-Cytoplasmic	939	1151	0.84
Transmembrane Helix	1152	1175	0.79
Cytoplasmic	1176	1190	0.75
Transmembrane Helix	1191	1207	0.78
Non-Cytoplasmic	1208	1221	0.71
Transmembrane Helix	1222	1245	0.79
Cytoplasmic	1246	1267	0.81
Transmembrane Helix	1268	1294	0.88
Non-Cytoplasmic	1295	1391	0.70
Transmembrane Helix	1392	1416	0.88
Cytoplasmic	1417	1508	0.64
Transmembrane Helix	1509	1528	0.87
Non-Cytoplasmic	1529	1538	0.70
Transmembrane Helix	1539	1563	0.83
Cytoplasmic	1564	1582	0.80
Transmembrane Helix	1583	1604	0.68
Non-Cytoplasmic	1605	1605	0.46
Transmembrane Helix	1606	1628	0.77
Cytoplasmic	1629	1639	0.56
Transmembrane Helix	1640	1663	0.65
Non-Cytoplasmic	1664	1691	0.58
Transmembrane Helix	1692	1717	0.84
Cytoplasmic	1718	1963	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANFLLPRGT SSFRRFTRES LAAIEKRMAE KQARGSTTLQ ESREGLPEEE APRPQLDLQA  60
   61 SKKLPDLYGN PPQELIGEPL EDLDPFYSTQ KTFIVPNKGK TIFRFSATNA LYVLSPFHPI 120
  121 RRAAVKILVH SLFNTLIMCT ILTNCVFMAQ HDPPPWTKYV EHTFTAIYTF ESLVKILARG 180
  181 SCLHAFTFLR GPWNWLDFSV IIMAYVSENI KLGNLSALRT FRVLRALKTI SVIPGLKTIV 240
  241 GALIQSVKKL ADVMVLTVFC LSVFALIGLQ LFMGNLRHKR VRNFTALNGI NGSVEADGLV 300
  301 WESLDLYLSD PENYLLKNGT SDVLLCGNSS DAGTCLEGYR CLKAGENPDH GYTSFDSFAW 360
  361 AFLALFRLMT QDCWERLYQQ TLRSAGKIYM IFFMLVIFLG SFYLVNLILA VVAMAYEEQN 420
  421 QATIAETEEK EKRFQEAMEM LKKEHEALTI RGADTVSRSS LEMSPLAPVN SHERRSKRRK 480
  481 RMSSGTEECG EDRLPKSDSE DGPRAMNHLS LTRGLSRTSM KPRSSRGSIF TFRRRDLGSE 540
  541 ADFADDENST AGESESHHTS LLVPWPLRRT SAQGQPSPGT SAPGHALHGK KNSTVDCNGV 600
  601 VSLLGAGDPE ATSPGSHLLR PVMLEHPPDT TTPSEEPGGP QMLTSQAPCV DGFEEPGARQ 660
  661 RALSAVSVLT SALEELEESR HKCPPCWNRL AQRYLIWECC PLWMSIKQGV KLVVMDPXTD 720
  721 LTITXCIVLN TLFMALEHYN MTSEFEEMLQ VGNLVFTGIF TAEMTFKIIA LDPYYYFQQG 780
  781 WNIFDSIIVI LSLMELGLSR MSNLSVLRSF RLLRVFKLAK SWPTLNTLIK IIGNSVGALG 840
  841 NLTLVLAIIV FIFAVVGMQL FGKNYSELRD SDSGLLPRWH MMDFFHAFLX IFRILCGEWI 900
  901 ETMWDCMEVS GQSLCLLVFL LVMVIGNLVV LNLFLALLLS SFSADNLTAP DEDGEMNNLQ 960
  961 LALARIQRGL RFVKRTTWDF CCGILRRRPK KPAALATHSQ LPSCITAPRS PPPPEVEKVP1020
 1021 PARKETRFEE DKRPGQGTPG DSEPVCVPIA VAESDTEDQE EDEENSLGTE EESSKQTPED1080
 1081 SYSEGSTADM TNTADLLEQI PDLGEDVKDP EDCFTEGCVR RCPCCMVDTT QSPGKVWWRL1140
 1141 RKTCYHIVEH SWFETFIIFM ILLSSGALAF EDIYLEERKT IKVLLEYADK MFTYVFVLEM1200
 1201 LLKWVAYGFK KYFTNAWCWL DFLIVDVSLV SLVANTLGFA EMGPIKSLRT LRALRPLRAL1260
 1261 SRFEGMRVVV NALVGAIPSI MNVLLVCLIF WLIFSIMGVN LFAGKFGRCI NQTEGDLPLN1320
 1321 YTIVNNKSEC ESFNVTGELY WTKVKVNFDN VGAGYLALLQ VATFKGWMDI MYAAVDSRGY1380
 1381 EEQPQWEDNL YMYIYFVVFI IFGSFFTLNL FIGVIIDNFN QQKKKLGGQD IFMTEEQKKY1440
 1441 YNAMKKLGSK KPQKPIPRPL NKYQGFIFDI VTKQAFDVTI MFLICLNMVT MMVETDDQSP1500
 1501 EKVNILAKIN LLFVAIFTGE CIVKMAALRH YYFTNSWNIF DFVVVILSIV GTVLSDIIQK1560
 1561 YFFSPTLFRV IRLARIGRIL RLIRGAKGIR TLLFALMMSL PALFNIGLLL FLVMFIYSIF1620
 1621 GMANFAYVKW EAGIDDMFNF QTFANSMLCL FQITTSAGWD GLLSPILNTG PPYCDPNLPN1680
 1681 SNGSRGNCGS PAVGILFFTT YIIISFLIVV NMYIAIILEN FSVATEESTE PLSEDDFDMF1740
 1741 YEIWEKFDPE ATQFIEYLAL SDFADALSEP LRIAKPNQIS LINMDLPMVS GDRIHCMDIL1800
 1801 FAFTKRVLGE SGEMDALKIQ MEEKFMAANP SKISYEPITT TLRRKHEEVS ATVIQRAFRR1860
 1861 HLLQRSVKHA SFLFRQQAGG SGLSDEDAPE REGLIAYMMN GNFSRRSAPL SSSSISSTSF1920
 1921 PPSYDSVTRA TSDNLPVRAS DYSRSEDLAD FPPSPDRDRE SIV