YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148833296
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	126	0.97
Transmembrane Helix	127	149	0.88
Non-Cytoplasmic	150	192	0.82
Transmembrane Helix	193	212	0.69
Cytoplasmic	213	225	0.76
Transmembrane Helix	226	245	0.84
Non-Cytoplasmic	246	252	0.76
Transmembrane Helix	253	274	0.93
Cytoplasmic	275	390	0.88
Transmembrane Helix	391	414	0.91
Non-Cytoplasmic	415	720	0.85
Transmembrane Helix	721	736	0.61
Cytoplasmic	737	750	0.53
Transmembrane Helix	751	771	0.67
Non-Cytoplasmic	772	782	0.83
Transmembrane Helix	783	804	0.83
Cytoplasmic	805	835	0.79
Transmembrane Helix	836	858	0.86
Non-Cytoplasmic	859	878	0.83
Transmembrane Helix	879	897	0.84
Cytoplasmic	898	913	0.70
Transmembrane Helix	914	938	0.89
Non-Cytoplasmic	939	1207	0.90
Transmembrane Helix	1208	1228	0.84
Cytoplasmic	1229	1243	0.80
Transmembrane Helix	1244	1260	0.81
Non-Cytoplasmic	1261	1274	0.71
Transmembrane Helix	1275	1298	0.79
Cytoplasmic	1299	1320	0.82
Transmembrane Helix	1321	1347	0.88
Non-Cytoplasmic	1348	1444	0.71
Transmembrane Helix	1445	1469	0.88
Cytoplasmic	1470	1561	0.64
Transmembrane Helix	1562	1581	0.87
Non-Cytoplasmic	1582	1591	0.70
Transmembrane Helix	1592	1616	0.83
Cytoplasmic	1617	1635	0.80
Transmembrane Helix	1636	1657	0.68
Non-Cytoplasmic	1658	1658	0.46
Transmembrane Helix	1659	1681	0.77
Cytoplasmic	1682	1692	0.56
Transmembrane Helix	1693	1716	0.65
Non-Cytoplasmic	1717	1744	0.58
Transmembrane Helix	1745	1770	0.84
Cytoplasmic	1771	2016	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANFLLPRGT SSFRRFTRES LAAIEKRMAE KQARGSTTLQ ESREGLPEEE APRPQLDLQA  60
   61 SKKLPDLYGN PPQELIGEPL EDLDPFYSTQ KTFIVPNKGK TIFRFSATNA LYVLSPFHPI 120
  121 RRAAVKILVH SLFNTLIMCT ILTNCVFMAQ HDPPPWTKYV EHTFTAIYTF ESLVKILARG 180
  181 SCLHAFTFLR GPWNWLDFSV IIMAYVSENI KLGNLSALRT FRVLRALKTI SVIPGLKTIV 240
  241 GALIQSVKKL ADVMVLTVFC LSVFALIGLQ LFMGNLRHKR VRNFTALNGI NGSVEADGLV 300
  301 WESLDLYLSD PENYLLKNGT SDVLLCGNSS DAGTCLEGYR CLKAGENPDH GYTSFDSFAW 360
  361 AFLALFRLMT QDCWERLYQQ TLRSAGKIYM IFFMLVIFLG SFYLVNLILA VVAMAYEEQN 420
  421 QATIAETEEK EKRFQEAMEM LKKEHEALTI RGADTVSRSS LEMSPLAPVN SHERRSKRRK 480
  481 RMSSGTEECG EDRLPKSDSE DGPRAMNHLS LTRGLSRTSM KPRSSRGSIF TFRRRDLGSE 540
  541 ADFADDENST AGESESHHTS LLVPWPLRRT SAQGQPSPGT SAPGHALHGK KNSTVDCNGV 600
  601 VSLLGAGDPE ATSPGSHLLR PVMLEHPPDT TTPSEEPGGP QMLTSQAPCV DGFEEPGARQ 660
  661 RALSAVSVLT SALEELEESR HKCPPCWNRL AQRYLIWECC PLWMSIKQGV KLVVMDPXTD 720
  721 LTITXCIVLN TLFMALEHYN MTSEFEEMLQ VGNLVFTGIF TAEMTFKIIA LDPYYYFQQG 780
  781 WNIFDSIIVI LSLMELGLSR MSNLSVLRSF RLLRVFKLAK SWPTLNTLIK IIGNSVGALG 840
  841 NLTLVLAIIV FIFAVVGMQL FGKNYSELRD SDSGLLPRWH MMDFFHAFLX IFRILCGEWI 900
  901 ETMWDCMEVS GQSLCLLVFL LVMVIGNLVV LNLFLALLLS SFSADNLTAP DEDGEMNNLQ 960
  961 LALARIQRGL RFVKRTTWDF CCGILRRRPK KPAALATHSQ LPSCITAPRS PPPPEVEKVP1020
 1021 PARKETRFEE DKRPGQGTPG DSEPVCVPIA VAESDTEDQE EDEENSLGTE EESSKQESQV1080
 1081 VSGGHEPYQE PRAWSQVSET TSSEAGASTS QADWQQEQKT EPQAPGCGET PEDSYSEGST1140
 1141 ADMTNTADLL EQIPDLGEDV KDPEDCFTEG CVRRCPCCMV DTTQSPGKVW WRLRKTCYHI1200
 1201 VEHSWFETFI IFMILLSSGA LAFEDIYLEE RKTIKVLLEY ADKMFTYVFV LEMLLKWVAY1260
 1261 GFKKYFTNAW CWLDFLIVDV SLVSLVANTL GFAEMGPIKS LRTLRALRPL RALSRFEGMR1320
 1321 VVVNALVGAI PSIMNVLLVC LIFWLIFSIM GVNLFAGKFG RCINQTEGDL PLNYTIVNNK1380
 1381 SECESFNVTG ELYWTKVKVN FDNVGAGYLA LLQVATFKGW MDIMYAAVDS RGYEEQPQWE1440
 1441 DNLYMYIYFV VFIIFGSFFT LNLFIGVIID NFNQQKKKLG GQDIFMTEEQ KKYYNAMKKL1500
 1501 GSKKPQKPIP RPLNKYQGFI FDIVTKQAFD VTIMFLICLN MVTMMVETDD QSPEKVNILA1560
 1561 KINLLFVAIF TGECIVKMAA LRHYYFTNSW NIFDFVVVIL SIVGTVLSDI IQKYFFSPTL1620
 1621 FRVIRLARIG RILRLIRGAK GIRTLLFALM MSLPALFNIG LLLFLVMFIY SIFGMANFAY1680
 1681 VKWEAGIDDM FNFQTFANSM LCLFQITTSA GWDGLLSPIL NTGPPYCDPN LPNSNGSRGN1740
 1741 CGSPAVGILF FTTYIIISFL IVVNMYIAII LENFSVATEE STEPLSEDDF DMFYEIWEKF1800
 1801 DPEATQFIEY LALSDFADAL SEPLRIAKPN QISLINMDLP MVSGDRIHCM DILFAFTKRV1860
 1861 LGESGEMDAL KIQMEEKFMA ANPSKISYEP ITTTLRRKHE EVSATVIQRA FRRHLLQRSV1920
 1921 KHASFLFRQQ AGGSGLSDED APEREGLIAY MMNGNFSRRS APLSSSSISS TSFPPSYDSV1980
 1981 TRATSDNLPV RASDYSRSED LADFPPSPDR DRESIV