YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TATC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTSTSSAL IHHFRLTTRN LGSPTKQRCP YAVTFCNSWR EAGLRYSVTQ RRSKGFGPVS  60
   61 ALNDDDSPTE TTPGVGSAVE DRPPDSSEDR SSSVYEFLYP RKEELPDDKE MTIFDHLEEL 120
  121 RERIFVSVLA VGAAILGCFA FSKDLIVFLE APVKTQGVRF LQLAPGEFFF TTLKVSGYCG 180
  181 LLLGSPVILY EIIAFVLPGL TRAERRFLGP IVFGSSLLFY AGLAFSYWVL TPAALNFFVN 240
  241 YAEGVVESLW SIDQYFEFVL VLMFSTGLSF QVPVIQLLLG QVGVVSGDQM LSIWRYVVVG 300
  301 AVVAAAVVTP STDPVTQMLL ATPLLGLYLG GAWMVKLTGR

Type	Start	End	Confidence
Cytoplasmic	1	123	0.98
Transmembrane Helix	124	143	0.93
Non-Cytoplasmic	144	174	0.89
Transmembrane Helix	175	197	0.87
Cytoplasmic	198	206	0.83
Transmembrane Helix	207	230	0.88
Non-Cytoplasmic	231	257	0.91
Transmembrane Helix	258	280	0.90
Cytoplasmic	281	290	0.89
Transmembrane Helix	291	310	0.93
Non-Cytoplasmic	311	317	0.75
Transmembrane Helix	318	337	0.93
Cytoplasmic	338	340	0.82