YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.83
Transmembrane Helix	8	28	0.95
Cytoplasmic	29	41	0.76
Transmembrane Helix	42	63	0.87
Non-Cytoplasmic	64	80	0.77
Transmembrane Helix	81	99	0.92
Cytoplasmic	100	107	0.53
Transmembrane Helix	108	130	0.81
Non-Cytoplasmic	131	138	0.79
Transmembrane Helix	139	158	0.88
Cytoplasmic	159	220	0.96
Transmembrane Helix	221	242	0.93
Non-Cytoplasmic	243	264	0.92
Transmembrane Helix	265	287	0.94
Cytoplasmic	288	307	0.90
Transmembrane Helix	308	326	0.95
Non-Cytoplasmic	327	333	0.75
Transmembrane Helix	334	355	0.90
Cytoplasmic	356	364	0.88
Transmembrane Helix	365	385	0.95
Non-Cytoplasmic	386	390	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYMIESKGGA IACMLLALLF LGTWPAIMTL TERRGRLPQH TYLDYTLTNL LAAVIIALTL  60
   61 GEIGPSRPNF FTQLSQDNWQ SVMFAMAGGI VLSLGNLATQ YAWAYVGLSV TEVITASITV 120
  121 VIGTTLNYFL DDRINRAEVL FPGVACFLIA VCFGSAVHKS NAADNKTKLQ NFKSLETTSS 180
  181 FEMETISASN GLTKGKAKEG TAAFLIELEK QRAIKVFGKS TIIGLVITFF AGICFSLFSP 240
  241 AFNLATNDQW HTLKHGVPKL NVYTAFFYFS ISAFVVALIL NIRFLYWPIL GLPRSSFKAY 300
  301 LNDWNGRGWS FLAGFLCGFG NGLQFMGGQA AGYAAADAVQ ALPLVSTFWG ILLFGEYRRS 360
  361 SRKTYTLLIS MLLMFIVAVA VLMASSGHRK