YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP14_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	21	0.98
Transmembrane Helix	22	42	0.95
Non-Cytoplasmic	43	83	0.95
Transmembrane Helix	84	106	0.85
Cytoplasmic	107	113	0.77
Transmembrane Helix	114	133	0.90
Non-Cytoplasmic	134	138	0.74
Transmembrane Helix	139	161	0.86
Cytoplasmic	162	171	0.82
Transmembrane Helix	172	193	0.85
Non-Cytoplasmic	194	201	0.80
Transmembrane Helix	202	224	0.88
Cytoplasmic	225	285	0.88
Transmembrane Helix	286	307	0.84
Non-Cytoplasmic	308	319	0.67
Transmembrane Helix	320	343	0.85
Cytoplasmic	344	351	0.81
Transmembrane Helix	352	374	0.76
Non-Cytoplasmic	375	384	0.58
Transmembrane Helix	385	405	0.92
Cytoplasmic	406	423	0.69
Transmembrane Helix	424	446	0.89
Non-Cytoplasmic	447	452	0.57
Transmembrane Helix	453	474	0.93
Cytoplasmic	475	504	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGALTDEG GLKRAHLYEH RITSYFIFAC IVGSMGGSLF GYDLGVSGGV TSMDDFLKEF  60
   61 FPGIYKRKQM HLNETDYCKY DNQILTLFTS SLYFAGLIST FGASYVTRIY GRRGSILVGS 120
  121 VSFFLGGVIN AAAKNILMLI LGRIFLGIGI GFGNQAVPLY LSEMAPAKIR GTVNQLFQLT 180
  181 TCIGILVANL INYKTEQIHP WGWRLSLGLA TVPAILMFLG GLVLPETPNS LVEQGKLEKA 240
  241 KAVLIKVRGT NNIEAEFQDL VEASDAARAV KNPFRNLLAR RNRPQLVIGA IGLPAFQQLT 300
  301 GMNSILFYAP VMFQSLGFGG SASLISSTIT NAALVVAAIM SMYSADKFGR RFLLLEASVE 360
  361 MFCYMVVVGV TLALKFGEGK ELPKSLGLIL VVLICLFVLA YGRSWGPMGW LVPSELFPLE 420
  421 TRSAGQSVVV CVNLFFTALI AQCFLVSLCH LKYGIFLLFA GLILGMGSFV YFLLPETKQV 480
  481 PIEEVYLLWR QHWLWKKYVE DVDE