YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUMP6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFKPFLEGG IAAIIAGALT HPLDLIKVRM QLQGEHSFSL DQNPNPNLSL DHNLPVKPYR  60
   61 PVFALDSLIG SISLLPLHIH APSSSTRSVM TPFAVGAHIV KTEGPAALFS GVSATILRQM 120
  121 LYSATRMGIY DFLKRRWTDQ LTGNFPLVTK ITAGLIAGAV GSVVGNPADV AMVRMQADGS 180
  181 LPLNRRRNYK SVVDAIDRIA RQEGVSSLWR GSWLTVNRAM IVTASQLATY DHVKEILVAG 240
  241 GRGTPGGIGT HVAASFAAGI VAAVASNPID VVKTRMMNAD KEIYGGPLDC AVKMVAEEGP 300
  301 MALYKGLVPT ATRQGPFTMI LFLTLEQVRG LLKDVKF

Type	Start	End	Confidence
Cytoplasmic	1	61	0.66
Transmembrane Helix	62	81	0.73
Non-Cytoplasmic	82	103	0.69
Transmembrane Helix	104	122	0.62
Cytoplasmic	123	142	0.71
Transmembrane Helix	143	165	0.63
Non-Cytoplasmic	166	247	0.76
Transmembrane Helix	248	269	0.75
Cytoplasmic	270	337	0.81