YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19699254, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSYGAVSV DVGTIYLGGK EHRVKTASGV VSVIVYGDRE KPALITYPDL ALNHMSCFQG  60
   61 LFFCPEAASL LLHNFCIYHI SPPGHELGAA PICPNDSVPS AENLADQILE VLNFFGLGVV 120
  121 MCMGVTAGAY ILTLFAMKHR ERVLGLILVS PLCKAPSWSE WFYNKVITNL LYYYGMCGVV 180
  181 KEFLLQRYFS KEVRGNVEIP ESDIAQACRR LLDERQGINV LRFLDAIDRR PDISSGLKKL 240
  241 KCRTLIFIGD QSPFYSEAVH MAATLDRGYC ALVEVQACGS MVTEEQPHAM LIPMEYFLMG 300
  301 YGLYRPSLFS ESPRSPLSPS CISPELLSPE SMGLKLKPIK TRISAA

Type	Start	End	Confidence
Cytoplasmic	1	59	0.78
Transmembrane Helix	60	77	0.62
Non-Cytoplasmic	78	113	0.79
Transmembrane Helix	114	135	0.92
Cytoplasmic	136	346	0.75