YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB13G_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPEGAMYV AWEDLTVVIP NFGEGATKRL LNGVNGCGEP NRILAIMGPS GSGKSTLLDA  60
   61 LAGRLAGNVV MSGKVLVNGK KRRLDFGAAA YVTQEDVLLG TLTVRESISY SAHLRLPSKL 120
  121 TREEISDIVE ATITDMGLEE CSDRTIGNWH LRGISGGEKK RLSIALEVLT KPSLLFLDEP 180
  181 TSGLDSASAF FVVQILRNIA SSGKTVVSSI HQPSGEVFAL FDDLLLLSGG ETVYFGEAES 240
  241 ATKFFGEAGF PCPSRRNPSD HFLRCVNSDF DNVTAALVES RRINDSSFSL HQLHETTNTL 300
  301 DPLDDIPTAE IRTTLVRKFK CSLYAAASRA RIQEIASIVG IVTERKKGSQ TNWWKQLRIL 360
  361 TQRSFINMSR DLGYYWMRIA VYIVLSICVG SIFFNVGRNH TNVMSTAACG GFMAGFMTFM 420
  421 SIGGFQSFIE EMKVFSRERL NGHYGVAVYT VSNLLSSLPF IILMCLSTSS ITIYMVRFQS 480
  481 GGSHFFYNCL DLICAITTVE SCMMMIASVV PNFLMGVMLG AGYIGIMVLS AGFFRFFPDL 540
  541 PMVFWRYPVS YINYGAWALQ GAYKNEMIGV EYDSPLPLVP KMKGELILQT VLGINPESSK 600
  601 WLDLAVVMMI LIGYRIAFFA ILKFREKVFP VIHMLYTKRT LSHIQKRPSF RRMTPFPSRR 660
  661 YPVHHALSSQ EGLNSPLH

Type	Start	End	Confidence
Non-Cytoplasmic	1	373	0.55
Transmembrane Helix	374	396	0.92
Cytoplasmic	397	402	0.48
Transmembrane Helix	403	425	0.88
Non-Cytoplasmic	426	445	0.50
Transmembrane Helix	446	476	0.72
Cytoplasmic	477	484	0.49
Transmembrane Helix	485	507	0.77
Non-Cytoplasmic	508	512	0.42
Transmembrane Helix	513	537	0.86
Cytoplasmic	538	542	0.51
Transmembrane Helix	543	559	0.34
Non-Cytoplasmic	560	600	0.77
Transmembrane Helix	601	622	0.85
Cytoplasmic	623	678	0.83