YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9757927, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGSLGKLM GGEERASKDT DTFNIFGPFH LTSIDWNNQY HRTSVASSLV NGVYTLEGDR  60
   61 LEEREGSEAL AKPWWEFFHF TLLETLIDDD SSIYGAIFEY ELYHLYQNTP HVKVPRYVIA 120
  121 FRGTVLKGKT WKFDLKLDLK CIFNTLHQGG RSMYAINVIR RMVDKHNHSA IWLAGHSLGA 180
  181 ALVLLAGKTM KISGFLLESY IFNPPISSIP LEQLPGGDII KGLFQITKSV VKATVAMALT 240
  241 DLQVPKDDPK TASWIPYLYV NPADPICAGY IDYFRHKTFM SEIGASHIER IGARKSVRSL 300
  301 LVGRRGKLSP SDLSSEPLHL LPSADMTVNK NKPTKSTTAH GLHQWWERDS TLRENWESCC 360
  361 IRPYHEGKLE QLTIQ

Type	Start	End	Confidence
Cytoplasmic	1	168	0.53
Transmembrane Helix	169	187	0.55
Non-Cytoplasmic	188	375	0.94