YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25405975, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	78	0.99
Transmembrane Helix	79	100	0.91
Cytoplasmic	101	109	0.73
Transmembrane Helix	110	132	0.85
Non-Cytoplasmic	133	150	0.83
Transmembrane Helix	151	174	0.86
Cytoplasmic	175	203	0.95
Transmembrane Helix	204	225	0.85
Non-Cytoplasmic	226	232	0.76
Transmembrane Helix	233	252	0.92
Cytoplasmic	253	415	0.99
Transmembrane Helix	416	436	0.89
Non-Cytoplasmic	437	454	0.68
Transmembrane Helix	455	477	0.80
Cytoplasmic	478	487	0.91
Transmembrane Helix	488	512	0.86
Non-Cytoplasmic	513	520	0.70
Transmembrane Helix	521	541	0.89
Cytoplasmic	542	549	0.68
Transmembrane Helix	550	569	0.92
Non-Cytoplasmic	570	574	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFRSLISLL FLLFFTSSAY ARFVSLNPSS TSLISDGIDG GSNLAGSGSV IKSVVSAPAE  60
   61 EKEEACEQTY GFMPCTKTAL GNVFLILVYG FLMFTAATYL SAGSELLLEI LGPGIVGGLF 120
  121 LPMLGALPDA MLIMVSGLSG DAATAQSQVS VGMGLLAGST VMLLTVIWGT CTVVGKCDLR 180
  181 DSIAVNNQDT KGFHLKDSGV TVDIWTSYAA RIMAISVIPF VIVQLPQMLG STSGRQLSVL 240
  241 IALILSVFQP WIQRRRLAFA KHKHVISGIL RHLKQHALGR LLDDEGQPDE HVIRKLFLTI 300
  301 DANNDGHLSA AELKALIIGI SFEDIDFDKD DAVGKVLQDF DKTLDEQVDQ EEFVRGIKQW 360
  361 LIQAMGGAPS GPEAGPRTMK FLDNFHVQTK REHALLGDNE NGENDEEGGE VADPKWITIK 420
  421 AALLLLLGAA IAAAFADPLV DTVNNFSAAT GIPSFFISFI ALPLATNSSE AVSAIIFASR 480
  481 KKIRTASLTF SELCGGVTMN NILCLSVFLA IVYVRGLTWN FSSEVLVILI VCLVMGGFAS 540
  541 FRTTYPLWTC FIAYLLYPFS LGLVYILDYW FGWS