YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15292789, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIPLPLTSC SPISTSSSIS RTSFVPLTLR NRTFFSNQNY SRRVLISCSS SLSSDNGSSP  60
   61 DSMNGNGNGN GSSLNGQSSF PRLPSFDGTS KPPLKWRRVL LKVSGEALAG DEEQNIDPKV 120
  121 TMAIAREVAA VTRLGIEVAI VVGGGNIFRG STWAGCSGLD RSSADYIGML ATVMNAIFLQ 180
  181 ATMESIGIPT RVQTAFRMSE VAEPYIRRRA IRHLEKGRVV IFAAGTGNPF FTTDTAAALR 240
  241 CAEINAEVVL KATNVDGVFD DDPKRNPNAR LLDSLTYQEV TSKDLSVMDM TAITLCQENN 300
  301 IPVVVFNLSE PGNIAKAIKG ERVGTLIGGT WNSIVTTTS

Type	Start	End	Confidence
Signal Peptide	1	18	0.56
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	339	0.87