YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.97
Transmembrane Helix	28	50	0.91
Non-Cytoplasmic	51	61	0.85
Transmembrane Helix	62	84	0.84
Cytoplasmic	85	99	0.81
Transmembrane Helix	100	118	0.92
Non-Cytoplasmic	119	125	0.66
Transmembrane Helix	126	147	0.88
Cytoplasmic	148	152	0.85
Transmembrane Helix	153	173	0.92
Non-Cytoplasmic	174	185	0.91
Transmembrane Helix	186	209	0.89
Cytoplasmic	210	227	0.90
Transmembrane Helix	228	248	0.91
Non-Cytoplasmic	249	265	0.83
Transmembrane Helix	266	290	0.87
Cytoplasmic	291	294	0.74
Transmembrane Helix	295	317	0.86
Non-Cytoplasmic	318	324	0.78
Transmembrane Helix	325	344	0.85
Cytoplasmic	345	358	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLKEEDEG RRRTSVPTQL MKLNRSQWWI LVFISIFFLI SAQAISVLLG RFYYNEGGNS  60
   61 KWISTLVQTG GFPILYLPLS LLPASQSSSS SSSSSSFKTL VWIYLSLGFA IGLDNFLYSV 120
  121 GLLYLSASTY SILCASQLAF NGVFYYYINS QKITCLIFFS VLFLSISAVL VSLDDDSNSP 180
  181 SGDSKWSYLI GCFCAVFASL IYSLQLSLMQ FSFEKVLKSE TLSMVLEMQI YTSLVASCVA 240
  241 VIGLFASGEW MLLSVEMEEF QEGQVIYVLT LVGAAVSCQL GCVGAVSLIF LVSSLFSNLI 300
  301 STLSLIVTPL AAIAVFHDKL TEVKMVAMPI AFTGFTFYIY QNYLDDLKVQ RAREAQAE