YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEX22_ARATH
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESSSPSPT EEIVRLIKRL SAYVAFKMSS LFSTTSIRNL DSRSIGAIAG LAIAVIFTWR  60
   61 AIRTPGEQRQ RRQPKRRIHN AETSSAAAAA SQSNLASSVA PEVSSPREDN AVQDVVDQFF 120
  121 QPVKPTLGQI VRQKLSEGRK VTCRLLGVIL EETSPEELQK QATVRSSVLE VLLEITKYSD 180
  181 LYLMERVLDD ESEAKVLQAL ENAGVFTSGG LVKDKVLFCS TEIGRTSFVR QLEPDWHIDT 240
  241 NPEISTQLAR FIKYQLHVAT VKPERTAPNV FTSQSIEQFF GSV

Type	Start	End	Confidence
Cytoplasmic	1	42	0.62
Transmembrane Helix	43	62	0.89
Non-Cytoplasmic	63	283	0.57