YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCS_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR  60
   61 SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC VNAVKNKLET IEGIEKVEVD 120
  121 LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA 180
  181 QVSMELARIE ANFTGLSPGT HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL 240
  241 EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC 300
  301 SCDGTVIWEA TNSDFVASKV

Type	Start	End	Confidence
Signal Peptide	1	33	0.85
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	320	0.99