YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9294273, gi\|1...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTFGSSLA SLFFLWATIQ QIFPNHLRIA IKEFLISTIQ QLSFVQRFSD RFINFFSPYV  60
   61 EISFSQYEDY QFNHAFAAIE TYLGAKATDK AKHLRASQVK ESKGLVLKRD ETKVRDEYEG 120
  121 GTVWWEMETD STGYRTFKLT FHRRSRDIVT DSYIKYVFEE GKSIQAKSKQ MKLFTNNPSS 180
  181 HWGTSKKSFW RYIDFEHPAS FHTLAMDTKK KEEILNDLAA FSNGKEYYKK IGKAWKRGYL 240
  241 LHGPPGTGKS TMIAAMANHL NYSIYDLELT AIRNNSELRK LLTATSSKSI IVIEDIDCSL 300
  301 DLTGKRKKEK NLMTSREDGE QGTEEDKSFV TLSGLLNFID GIWSACGQER IIIFTTNHFE 360
  361 KLDPALIRRG RMDMHIELSY CSFEAFKILA KNYLDLDTHP LFKKIESLLK ETKIAPADVA 420
  421 ENLMKKNTEI DADGSLKDLI QALEGKKKIH GAQVDEPKDK YTKKFYKAFC MSSKA

Type	Start	End	Confidence
Signal Peptide	1	21	0.90
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	475	0.99