YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NDUA9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT  60
   61 GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR GSEDSPRHLK LMGDLGQVVP 120
  121 MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY 180
  181 IQVSCLGASV SSPSRMLRAK AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY 240
  241 GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM 300
  301 IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF 360
  361 QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF YP

Type	Start	End	Confidence
Cytoplasmic	1	63	0.51
Transmembrane Helix	64	81	0.53
Non-Cytoplasmic	82	402	0.94