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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HERK_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.62
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIEKFETFI LISTISILLC ICHGFTPVDN YLINCGSPTN GTLMGRIFLS DKLSSKLLTS  60
   61 SKEILASVGG NSGSDIYHTA RVFTEVSSYK FSVTRGRHWV RLYFNPFDYQ NFKMGSAKFA 120
  121 VSSQSHVLLS DFTVTSSKVV KEYSLNVTTN DLVLTFTPSS GSFAFVNAIE VISIPDTLIT 180
  181 GSPRFVGNPA QFPDMSMQGL ETIHRVNMGG PLVASNNDTL TRTWVPDSEF LLEKNLAKSM 240
  241 SKFSTVNFVP GYATEDSAPR TVYGSCTEMN SADNPNSIFN VTWEFDVDPG FQYYFRFHFC 300
  301 DIVSLSLNQL YFNLYVDSMV AATDIDLSTL VDNTLAGAYS MDFVTQTPKG SNKVRVSIGP 360
  361 STVHTDYPNA IVNGLEIMKM NNSKGQLSTG TFVPGSSSSS KSNLGLIVGS AIGSLLAVVF 420
  421 LGSCFVLYKK RKRGQDGHSK TWMPFSINGT SMGSKYSNGT TLTSITTNAN YRIPFAAVKD 480
  481 ATNNFDESRN IGVGGFGKVY KGELNDGTKV AVKRGNPKSQ QGLAEFRTEI EMLSQFRHRH 540
  541 LVSLIGYCDE NNEMILIYEY MENGTVKSHL YGSGLPSLTW KQRLEICIGA ARGLHYLHTG 600
  601 DSKPVIHRDV KSANILLDEN FMAKVADFGL SKTGPELDQT HVSTAVKGSF GYLDPEYFRR 660
  661 QQLTDKSDVY SFGVVLFEVL CARPVIDPTL PREMVNLAEW AMKWQKKGQL DQIIDQSLRG 720
  721 NIRPDSLRKF AETGEKCLAD YGVDRPSMGD VLWNLEYALQ LQEAVIDGEP EDNSTNMIGE 780
  781 LPPQINNFSQ GDTSVNVPGT AGRFEESSID DLSGVSMSKV FSQLVKSEGR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle