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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25402861, gi|...
Protein type: Transmembrane
Type Confidence: 0.69
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRENPSGI CKSIPKLISS FVDTFVDYSV SGIFLPQDPS SQNEILQTRF EKPERLVAIG  60
   61 DLHGDLEKSR EAFKIAGLID SSDRWTGGST MVVQVGDVLD RGGEELKILY FLEKLKREAE 120
  121 RAGGKILTMN GNHEIMNIEG DFRYVTKKGL EEFQIWADWY CLGNKMKTLC SGLDKPKDPY 180
  181 EGIPMSFPRM RADCFEGIRA RIAALRPDGP IAKRFLTKNQ TVAVVGDSVF VHGGLLAEHI 240
  241 EYGLERINEE VRGWINGFKG GRYAPAYCRG GNSVVWLRKF SEEMAHKCDC AALEHALSTI 300
  301 PGVKRMIMGH TIQDAGINGV CNDKAIRIDV GMSKGCADGL PEVLEIRRDS GEAYLMASVL 360
  361 LPLPQVFVLF DYRRSRKESS FPRAVYNSNS ISSNSTNANH FLRRISNFCE TGDLDKSFRT 420
  421 VQEFVGDDES SSDAFLLVRE ALGLLLQASG KRKDIEMGRK IHQLVSGSTR LRNDDVLCTR 480
  481 IITMYAMCGS PDDSRFVFDA LRSKNLFQWN AVISSYSRNE LYDEVLETFI EMISTTDLLP 540
  541 DHFTYPCVIK ACAGMSDVGI GLAVHGLVVK TGLVEDVFVG NALVSFYGTH GFVTDALQLF 600
  601 DIMPERNLVS WNSMIRVFSD NGFSEESFLL LGEMMEENGD GAFMPDVATL VTVLPVCARE 660
  661 REIGLGKGVH GWAVKLRLDK ELVLNNALMD MYSKCGCITN AQMIFKMNNN KNVVSWNTMV 720
  721 GGFSAEGDTH GTFDVLRQML AGGEDVKADE VTILNAVPVC FHESFLPSLK ELHCYSLKQE 780
  781 FVYNELVANA FVASYAKCGS LSYAQRVFHG IRSKTVNSWN ALIGGHAQSN DPRLSLDAHL 840
  841 QMKISGLLPD SFTVCSLLSA CSKLKSLRLG KEVHGFIIRN WLERDLFVYL SVLSLYIHCG 900
  901 ELCTVQALFD AMEDKSLVSW NTVITGYLQN GFPDRALGVF RQMVLYGIQL CGISMMPVFG 960
  961 ACSLLPSLRL GREAHAYALK HLLEDDAFIA CSLIDMYAKN GSITQSSKVF NGLKEKSTAS1020
 1021 WNAMIMGYGI HGLAKEAIKL FEEMQRTGHN PDDLTFLGVL TACNHSGLIH EGLRYLDQMK1080
 1081 SSFGLKPNLK HYACVIDMLG RAGQLDKALR VVAEEMSEEA DVGIWKSLLS SCRIHQNLEM1140
 1141 GEKVAAKLFE LEPEKPENYV LLSNLYAGLG KWEDVRKVRQ RMNEMSLRKD AGCSWIELNR1200
 1201 KVFSFVVGER FLDGFEEIKS LWSILEMKIS KMGYRPDTMS VQHDLSEEEK IEQLRGHSEK1260
 1261 LALTYGLIKT SEGTTIRVYK NLRICVDCHN AAKLISKVME REIVVRDNKR FHHFKNGEEK1320
 1321 QDAMKSSMSI IVFLFVTIFT ISASSLNPEE TCIQRNINRS QPPSSSLEPK TSKFDFLVDK1380
 1381 LCRDMARAVM FSVRITGKFP SHYVKAMCNV FGNDEKKVKE YVVKKWLGGE KVLSNLVSKK1440
 1441 DIYMASRNQE KSPKVQELYD LCKETFTGKA PSPASMAIQK LCSVLDSVSP ADVGLEEVSQ1500
 1501 DDDRGYGVSG VSRFNRVGRW AQPITFLDIH ECDTFTMCIF CFPTSSVIPL HDHPEMAVFS1560
 1561 KILYGSLHVK AYDWVEPPCI ITQDKGVPGS LPARLAKLVS DKVITPQSEI PALYPKTGGN1620
 1621 LHCFTALTPC AVLDILSPPY KESVGRSCSY YMDYPFSTFA LENGMKKVDE GKEDEYAWLV1680
 1681 QIDTPDDLHM RPGSYTGPTI RV

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