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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: FTSH4_ARATH
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWRRIITKV SSHERELSSL RSLLVRAYSS FPRVGVTGAV GGGGASLPRT RFQSSYVGSF  60
   61 ARRVRDREEV NEVAHLRELI RRNDPEAVIR MFESQPSLHA NASALSEYIK ALVKVDRLDQ 120
  121 SELVRTLQRG IAGVAREEET FGGLGAFRNV GKPTKDGVLG TASAPIHTIS TERTHFKEQL 180
  181 WSTIRTIGVG FLLISGIGAL IEDRGIGKGL GLHEEVQPSM DSSTKFSDVK GVDEAKAELE 240
  241 EIVHYLRDPK RFTRLGGKLP KGVLLVGPPG TGKTMLARAI AGEAGVPFFS CSGSEFEEMF 300
  301 VGVGARRVRD LFSAAKKCSP CIIFIDEIDA IGGSRNPKDQ QYMKMTLNQM LVELDGFKQN 360
  361 EGIIVVAATN FPESLDKALV RPGRFDRHIV VPNPDVEGRR QILESHMSKV LKAEDVDLMI 420
  421 IARGTPGFSG ADLANLVNVA ALKAAMDGSK DVTMSDLEFA KDRIMMGSER KSAVISDESR 480
  481 KLTAFHEGGH ALVAIHTEGA LPVHKATIVP RGMALGMVSQ LPDKDETSIS RKQMLARLDV 540
  541 CMGGRVAEEL IFGESEVTSG ASSDLEQATK LARAMVTKFG MSKEVGLVAH NYDDNGKSMS 600
  601 TETRLLIESE VKQLLEKAYN NAKTILTVYN KELHALANAL LQHETLSGKQ IKELLTDLNS 660
  661 PLLQKRQEVV TKQSNPVPPS TPSSASSAAA AAAAAAAAAA AAAATAATKG KDMAPVS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle