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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6822074, gi|1...
Protein type: Globular with Signal Peptide
Type Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD  60
   61 TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN VDEVVAFRNL QSKILANAPF 120
  121 RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE 180
  181 MIRDEDLIEQ KSNVPANGVG NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA 240
  241 KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH 300
  301 SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR 360
  361 EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI GGDYDINVKD EDAEFLLPPV 420
  421 KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL 480
  481 DLVKQARHSW IKNFEFLQDC TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM 540
  541 NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS 600
  601 DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS 660
  661 QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES PYALSGLAPR LWPFTRHDIT 720
  721 SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE 780
  781 RVWRLLVQCP VDDLEDTAKF YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM 840
  841 KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI 900
  901 FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS 960
  961 PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA SQLLHTVETC HCFDKLLSTN1020
 1021 KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN1080
 1081 LHITVTSLVA AAVVWMSEFP ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR1140
 1141 KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE1200
 1201 DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE1260
 1261 SISDPQVVRS IAPVMEETLK PRLLSLLPCI FKCVRHSHVA VRLAASRCVM TMAKSMTTDV1320
 1321 MAAVVESAIP MLGDLTCISG RQGAGMLIGL LVQGLGVELV PYSPLLVVPL LRCMSDVDSS1380
 1381 VRQSVTRSFA ALVPMLPLAR GVPPPVGLSK DLSSNAEDAK FLEQLLDNSH IDDYKLCTEL1440
 1441 KVQLRRYQQE GINWLGFLKR FKLHGILCDD MGLGKTLQAS AIVASDAAER RGSTDELDVF1500
 1501 PSIIVCPSTL VGHWAFEIEK YIDLSLLSVL QYVGSAQDRV SLREQFNNHN VIITSYDVVR1560
 1561 KDVDYLTQFS WNYCILDEGH IIKNAKSKIT AAVKQLKAQH RLILSGTPIQ NNIMELWSLF1620
 1621 DFLMPGFLGT ERQFQASYGK PLLAARDPKC SAKDAEAGVL AMEALHKQVM PFLLRRTKEE1680
 1681 VLSDLPEKII QDRYCDLSPV QLKLYEQFSG SSAKQEISSI IKVDGSADSG NADVAPTKAS1740
 1741 THVFQALQYL LKLCSHPLLV LGDKVTEPVA SDLAAMINGC SDIITELHKV QHSPKLVALQ1800
 1801 EILEECGIGS DASSSDGTLS VGQHRVLIFA QHKALLDIIE KDLFQAHMKS VTYMRLDGSV1860
 1861 VPEKRFEIVK AFNSDPTIDV LLLTTHVGGL GLNLTSADTL VFMEHDWNPM RDHQFANIEL1920
 1921 NKLWQAMDRA HRLGQKRVVN VHRLIMRGTL EEKVMSLQKF KVSVANTVIN AENASMKTMN1980
 1981 TDQLLDLFAS AETSKKGGGS SKKGSEDNDQ IAGTGKGMKA ILGNLEELWD QSQYTEEYNL2040
 2041 SQFLTKLNG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle