YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9759339
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESVVCLQC IKLWGYFLQK WKILCFRNED SAPENPEHFV PEELVKPDQD SPCTDKTDWK  60
   61 ATFQKAADAV LKAIGTRWKV PWTVETIVQV MLLWVAAFWF IGSWMIPFMA HISGFHKESL 120
  121 TFRGQALFSL ITDVTEGLAG IAILHRCLSM FRPLASDWFR FTLKGNWQLD VIIGCFMFPF 180
  181 VNRLSQLNLN LLPLPPTSSP VSLSSVEQSI MARDPVAMAL YAVVVSICAP VWEEIVFRGF 240
  241 LLPSLTRYMP VWCAILVSSI AFALAHFNVQ RMLPLVFLGV VLGLIFARSR NLLPSMLLHS 300
  301 LWNGFVFMEL MR

Type	Start	End	Confidence
Cytoplasmic	1	86	0.97
Transmembrane Helix	87	108	0.86
Non-Cytoplasmic	109	125	0.85
Transmembrane Helix	126	148	0.87
Cytoplasmic	149	165	0.88
Transmembrane Helix	166	185	0.85
Non-Cytoplasmic	186	216	0.85
Transmembrane Helix	217	236	0.87
Cytoplasmic	237	247	0.73
Transmembrane Helix	248	267	0.93
Non-Cytoplasmic	268	272	0.76
Transmembrane Helix	273	292	0.86
Cytoplasmic	293	312	0.83