YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLT5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.96
Transmembrane Helix	35	56	0.90
Non-Cytoplasmic	57	72	0.86
Transmembrane Helix	73	94	0.88
Cytoplasmic	95	103	0.80
Transmembrane Helix	104	123	0.94
Non-Cytoplasmic	124	129	0.75
Transmembrane Helix	130	152	0.89
Cytoplasmic	153	161	0.88
Transmembrane Helix	162	185	0.82
Non-Cytoplasmic	186	193	0.79
Transmembrane Helix	194	215	0.91
Cytoplasmic	216	289	0.97
Transmembrane Helix	290	315	0.72
Non-Cytoplasmic	316	332	0.85
Transmembrane Helix	333	354	0.92
Cytoplasmic	355	361	0.88
Transmembrane Helix	362	384	0.93
Non-Cytoplasmic	385	392	0.84
Transmembrane Helix	393	419	0.85
Cytoplasmic	420	437	0.79
Transmembrane Helix	438	455	0.86
Non-Cytoplasmic	456	462	0.70
Transmembrane Helix	463	483	0.93
Cytoplasmic	484	539	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGATPENRT APSPPPVKHV PESVLPAKPP KRNNYAFACA ILASMTSILL GYDIGVMSGA  60
   61 MIYIKRDLKI NDLQIGILAG SLNIYSLIGS CAAGRTSDWI GRRYTIVLAG AIFFAGAILM 120
  121 GLSPNYAFLM FGRFIAGIGV GYALMIAPVY TAEVSPASSR GFLNSFPEVF INAGIMLGYV 180
  181 SNLAFSNLPL KVGWRLMLGI GAVPSVILAI GVLAMPESPR WLVMQGRLGD AKRVLDKTSD 240
  241 SPTEATLRLE DIKHAAGIPA DCHDDVVQVS RRNSHGEGVW RELLIRPTPA VRRVMIAAIG 300
  301 IHFFQQASGI DAVVLFSPRI FKTAGLKTDH QQLLATVAVG VVKTSFILVA TFLLDRIGRR 360
  361 PLLLTSVGGM VLSLAALGTS LTIIDQSEKK VMWAVVVAIA TVMTYVATFS IGAGPITWVY 420
  421 SSEIFPLRLR SQGSSMGVVV NRVTSGVISI SFLPMSKAMT TGGAFYLFGG IATVAWVFFY 480
  481 TFLPETQGRM LEDMDELFSG FRWRDSKSKP KGNPEKTVPN PEVEIGSNKQ WKEGDTQSS