YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLTTTRQRR PLISDSSSSS STKSYSKTDK PGRSNGGDAE DGGLRWFLPF IALCYLRYMS  60
   61 ATSNIIHDCD EVFNYWEPLH YILYKSGFQT WEYSSNFALR SYLYILFHEL AGRPASWWFG 120
  121 DDKVRVFYAV RLFLGLVSAV SDTVLVVALS RKYGKRIATY AVAMLCLTSG CFFASTSFLP 180
  181 SSFSMYAISL SSGLLLFEKY AMAVAVSVVG VILGWPFSIL AFLPVVIYSL VKRFKQAFIA 240
  241 GAVTTIFLLG VSLLVDYYYY KRWTSSVLNL LIYNVLGGGE SHLYGTEGAL FYIRNGFNNF 300
  301 NFCFILAMLF VAIYPVIRRK YDRALLVVIS PMYIWLAFMS LQPHKEERFL YPIYPLICVS 360
  361 ASAVIENIPE LFREKYSSRE SLLVTITKYM RPVILGCILC ASHSRTFALI NGYSAPLEVY 420
  421 KLLEHHDDAG PGSVLCVGSE WHRYPSSFFV PHYISEVRWI DDGFRGLLPF PFNNTLGGTS 480
  481 ASPPYFNNKN QASEEQYLKN IETCTFLIEL QLSRPYQYRG SDLSTWEAIA VLPYLDRELS 540
  541 PAKYRSFFIP HMWQEKNVFG KYVALRRVPK

Type	Start	End	Confidence
Cytoplasmic	1	97	0.71
Transmembrane Helix	98	112	0.41
Non-Cytoplasmic	113	126	0.67
Transmembrane Helix	127	149	0.82
Cytoplasmic	150	156	0.88
Transmembrane Helix	157	179	0.90
Non-Cytoplasmic	180	200	0.78
Transmembrane Helix	201	227	0.85
Cytoplasmic	228	236	0.76
Transmembrane Helix	237	259	0.91
Non-Cytoplasmic	260	296	0.83
Transmembrane Helix	297	317	0.90
Cytoplasmic	318	323	0.82
Transmembrane Helix	324	342	0.90
Non-Cytoplasmic	343	570	0.64