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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CRK30_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQNNLFSLI FWLVPVSLII VVSAQLCSEK FGTFTPGGTF DKNRRIILSS LPSEVTAQDG  60
   61 FYNASIGTDP DQLYAMGMCI PGAKQKLCRD CIMDVTRQLI QTCPNQTAAI HWSGGGKTVC 120
  121 MARYYNQPSS RPLDLESVSI GYNVGNLSTN LTDFDRLWER LIAHMVTKAS SASIKYLSFD 180
  181 NSRFYAADET NLTNSQMVYA LMQCTPDVSP SNCNTCLKQS VDDYVGCCHG KQGGYVYRPS 240
  241 CIFRWDLYPF NGAFDLLTLA PPPSSQLQSP PPVTNKDEKT IHTGTIIGIV IVVAMVIIMA 300
  301 LLALGVSVCR SRKKYQAFAS ETADDITTVG YLQFDIKDIE AATSNFLASN KIGQGGFGEV 360
  361 YKGTLSNGTE VAVKRLSRTS DQGELEFKNE VLLVAKLQHR NLVRLLGFAL QGEEKILVFE 420
  421 FVPNKSLDYF LFGSTNPTKK GQLDWTRRYN IIGGITRGLL YLHQDSRLTI IHRDIKASNI 480
  481 LLDADMNPKI ADFGMARNFR DHQTEDSTGR VVGTFGYMPP EYVAHGQFST KSDVYSFGVL 540
  541 ILEIVSGRKN SSFYQMDGSV CNLVTYVWRL WNTDSSLELV DPAISGSYEK DEVTRCIHIG 600
  601 LLCVQENPVN RPALSTIFQM LTNSSITLNV PQPPGFFFRN RPESDTLRRG LEPDQYNNES 660
  661 VTCSIDNATI TTLLGKTLAS ALCCITSTLF SKSMYRNTED 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle