YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.96
Transmembrane Helix	34	57	0.82
Non-Cytoplasmic	58	67	0.80
Transmembrane Helix	68	89	0.80
Cytoplasmic	90	107	0.73
Transmembrane Helix	108	130	0.93
Non-Cytoplasmic	131	148	0.90
Transmembrane Helix	149	171	0.86
Cytoplasmic	172	179	0.69
Transmembrane Helix	180	200	0.92
Non-Cytoplasmic	201	208	0.74
Transmembrane Helix	209	230	0.92
Cytoplasmic	231	251	0.89
Transmembrane Helix	252	270	0.89
Non-Cytoplasmic	271	288	0.79
Transmembrane Helix	289	311	0.80
Cytoplasmic	312	328	0.74
Transmembrane Helix	329	351	0.87
Non-Cytoplasmic	352	370	0.81
Transmembrane Helix	371	393	0.86
Cytoplasmic	394	402	0.76
Transmembrane Helix	403	424	0.89
Non-Cytoplasmic	425	432	0.82
Transmembrane Helix	433	457	0.90
Cytoplasmic	458	476	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPFLLQDE HLVPCKDTWK SGQVTVELKK VSSLAAPMAA VTIAQYLLPV ISVMVAGHNG  60
   61 ELQLSGVALA TSFTNVSGFS ILFGLAGALE TLCGQAYGAK QYEKIGTYTY SATASNIPIC 120
  121 VLISVLWIYI EKLLISLGQD PDISRVAGSY ALWLIPALFA HAFFIPLTRF LLAQGLVLPL 180
  181 LYCTLTTLLF HIPVCWAFVY AFGLGSNGAA MAISVSFWFY VVILSCYVRY SSSCDKTRVF 240
  241 VSSDFVSCIK QFFHFGVPSA AMVCLEWWLF ELLILCSGLL PNPKLETSVL SICLTTASLH 300
  301 YVIPGGVAAA VSTRVSNKLG AGIPQVARVS VLAGLCLWLV ESAFFSTLLF TCRNIIGYAF 360
  361 SNSKEVVDYV ANLTPLLCLS FILDGFTAVL NGVARGSGWQ HIGALNNVVA YYLVGAPVGV 420
  421 YLAFNRELNG KGLWCGVVVG SAVQAIILAF VTASINWKEQ AEKARKRMVS SENRLA