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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LRK81_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFLSFFIS ILLCFFNGAT TTQFDFSTLA ISNLKLLGDA RLSNGIVGLT RDLSVPNSGA  60
   61 GKVLYSNPIR FRQPGTHFPT SFSSFFSFSI TNVNPSSIGG GLAFVISPDA NSIGIAGGSL 120
  121 GLTGPNGSGS KFVAVEFDTL MDVDFKDINS NHVGFDVNGV VSSVSGDLGT VNIDLKSGNT 180
  181 INSWIEYDGL TRVFNVSVSY SNLKPKVPIL SFPLDLDRYV NDFMFVGFSG STQGSTEIHS 240
  241 IEWWSFSSSF GSSLGSGSGS PPPRANLMNP KANSVKSPPP LASQPSSSAI PISSNTQLKT 300
  301 SSSSSCHSRF CKENPGTIAG VVTAGAFFLA LFAGALFWVY SKKFKRVERS DSFASEIIKA 360
  361 PKEFSYKELK AGTKNFNESR IIGHGAFGVV YRGILPETGD IVAVKRCSHS SQDKKNEFLS 420
  421 ELSIIGSLRH RNLVRLQGWC HEKGEILLVY DLMPNGSLDK ALFESRFTLP WDHRKKILLG 480
  481 VASALAYLHR ECENQVIHRD VKSSNIMLDE SFNAKLGDFG LARQIEHDKS PEATVAAGTM 540
  541 GYLAPEYLLT GRASEKTDVF SYGAVVLEVV SGRRPIEKDL NVQRHNVGVN PNLVEWVWGL 600
  601 YKEGKVSAAA DSRLEGKFDE GEMWRVLVVG LACSHPDPAF RPTMRSVVQM LIGEADVPVV 660
  661 PKSRPTMSFS TSHLLLSLQD TLSDCNTVAL NSSRSSSWSV PEHNVIIRSD DDHLV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle