YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2464901, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.95
Transmembrane Helix	33	54	0.91
Non-Cytoplasmic	55	82	0.94
Transmembrane Helix	83	103	0.89
Cytoplasmic	104	109	0.75
Transmembrane Helix	110	132	0.87
Non-Cytoplasmic	133	138	0.63
Transmembrane Helix	139	157	0.93
Cytoplasmic	158	168	0.83
Transmembrane Helix	169	191	0.91
Non-Cytoplasmic	192	202	0.78
Transmembrane Helix	203	224	0.94
Cytoplasmic	225	263	0.93
Transmembrane Helix	264	285	0.86
Non-Cytoplasmic	286	296	0.83
Transmembrane Helix	297	318	0.94
Cytoplasmic	319	330	0.89
Transmembrane Helix	331	352	0.91
Non-Cytoplasmic	353	360	0.79
Transmembrane Helix	361	382	0.89
Cytoplasmic	383	402	0.78
Transmembrane Helix	403	420	0.75
Non-Cytoplasmic	421	448	0.75
Transmembrane Helix	449	471	0.83
Cytoplasmic	472	489	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHARTRTGI ISVAFKFFRS LFPRHHRTNS MKIKTGTFLG VSISLILINL AAIMERADEN  60
   61 LLPSVYKEVS EAFNAGPSDL GYLTFVRNFV QGLASPLAGV LVITYDRPIV LAIGTFCWAL 120
  121 STAAVGASSY FIQVALWRAV NGFGLAIVIP ALQSFIADSY KDGARGAGFG MLNLIGTIGG 180
  181 IGGGVVATVM AGSEFWGIPG WRCAFIMMAA LSAVIGLLVF LFVVDPRKNI EREELMAHKM 240
  241 NSNSVWNDSL AAAKSVVKVS TFQIIVAQGI IGSFPWTAMV FFTMWFELIG FDHNQTAALL 300
  301 GVFATGGAIG TLMGGIIADK MSRIYPNSGR VMCAQFSAFM GIPFSIILLK VIPQSTSSYS 360
  361 IFSITLFLMG LTITWCGSAV NAPMFAEVVP PRHRTMIYAF DRAFEGSFSS FAAPLVGILS 420
  421 EKLFGYDSRG IDPLKGSSVR EADALSKGLL SMMAVPFGLC CLCYTPLHFV FQKDRENAKI 480
  481 ASSKETEMI