YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQTIHRVSP ISMSISELTT LLSSGVSVFE IFAGLLVVHL IYQRIRTRVK VYLLDFTCYR  60
   61 APDSNRVPMS TLIETIYLDD KLDQESIDFQ ARILERSWLS NQTSIPRSLM EIPLKKSLSS 120
  121 VKIETMTTIF TSVEDLLRKN KLSPRSIDIL ITNCSLHSPS PSLSAMVINK FHMRSNIKSF 180
  181 NLSGMGCAAG ILSVNLANDL LQAHRGSLAL IVSTEALNTH WYIGKDRSML LTNCLFRMGA 240
  241 AAVLMSSNDH DRDNAKYELL HVVRKNKAKD DRAYRCIYQD IDSDEKQGVS ITKDVISVAG 300
  301 DMLKMNLTSL GPLVLPYLEQ FQYVIQHILC KKLKIYESNS SYTPNFKTAF EHFCIHTGGR 360
  361 AVIQAMEMNL KLTKVDIEPS KMTLHRFGNT SSSSIWYALS YLEAKRRMKK GDRVLQIAFG 420
  421 SGFKCNSAVW RCIRKVEPNT ENKWLDFIDS YPVDVPDSTN IRPG

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.53
Transmembrane Helix	18	42	0.85
Cytoplasmic	43	178	0.51
Transmembrane Helix	179	197	0.43
Non-Cytoplasmic	198	464	0.83