YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GDL75_ARATH
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDSEIFKFK DMMMMSCTVQ TLVLVPWFLV VFVLAGGEDS SETTAMFPAM FVFGDSLVDN  60
   61 GNNNHLNSLA RSNYLPYGID FAGNQPTGRF SNGKTIVDFI GELLGLPEIP AFMDTVDGGV 120
  121 DILHGVNYAS AAGGILEETG RHLGERFSMG RQVENFEKTL MEISRSMRKE SVKEYMAKSL 180
  181 VVVSLGNNDY INNYLKPRLF LSSSIYDPTS FADLLLSNFT THLLELYGKG FRKFVIAGVG 240
  241 PLGCIPDQLA AQAALPGECV EAVNEMAELF NNRLVSLVDR LNSDNKTASE AIFVYGNTYG 300
  301 AAVDILTNPF NYGFEVTDRG CCGVGRNRGE ITCLPLAVPC AFRDRHVFWD AFHPTQAFNL 360
  361 IIALRAFNGS KSDCYPINLS QLSRL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.87
Transmembrane Helix	16	37	0.88
Non-Cytoplasmic	38	385	0.96