YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX18_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.96
Transmembrane Helix	29	50	0.92
Cytoplasmic	51	59	0.86
Transmembrane Helix	60	81	0.85
Non-Cytoplasmic	82	90	0.90
Transmembrane Helix	91	111	0.87
Cytoplasmic	112	125	0.82
Transmembrane Helix	126	147	0.92
Non-Cytoplasmic	148	157	0.78
Transmembrane Helix	158	180	0.91
Cytoplasmic	181	192	0.91
Transmembrane Helix	193	215	0.88
Non-Cytoplasmic	216	223	0.79
Transmembrane Helix	224	247	0.89
Cytoplasmic	248	263	0.91
Transmembrane Helix	264	284	0.94
Non-Cytoplasmic	285	341	0.73
Transmembrane Helix	342	367	0.82
Cytoplasmic	368	373	0.60
Transmembrane Helix	374	394	0.52
Non-Cytoplasmic	395	404	0.64
Transmembrane Helix	405	428	0.89
Cytoplasmic	429	455	0.64
Transmembrane Helix	456	470	0.22
Non-Cytoplasmic	471	810	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNSTKACP APMKATSNGV FQGDNPIDFA LPLAILQIVI VIVLTRVLAY LLRPLRQPRV  60
   61 IAEVIGGIML GPSLLGRSKA FLDAVFPKKS LTVLETLANL GLLFFLFLAG LEIDTKALRR 120
  121 TGKKALGIAL AGITLPFALG IGSSFVLKAT ISKGVNSTAF LVFMGVALSI TAFPVLARIL 180
  181 AELKLLTTEI GRLAMSAAAV NDVAAWILLA LAIALSGSNT SPLVSLWVFL SGCAFVIGAS 240
  241 FIIPPIFRWI SRRCHEGEPI EETYICATLA VVLVCGFITD AIGIHSMFGA FVVGVLIPKE 300
  301 GPFAGALVEK VEDLVSGLFL PLYFVASGLK TNVATIQGAQ SWGLLVLVTA TACFGKILGT 360
  361 LGVSLAFKIP MREAITLGFL MNTKGLVELI VLNIGKDRKV LNDQTFAIMV LMALFTTFIT 420
  421 TPVVMAVYKP ARRAKKEGEY KHRAVERENT NTQLRILTCF HGAGSIPSMI NLLEASRGIE 480
  481 KGEGLCVYAL HLRELSERSS AILMVHKVRK NGMPFWNRRG VNADADQVVV AFQAFQQLSR 540
  541 VNVRPMTAIS SMSDIHEDIC TTAVRKKAAI VILPFHKHQQ LDGSLETTRG DYRWVNRRVL 600
  601 LQAPCSVGIF VDRGLGGSSQ VSAQDVSYSV VVLFFGGPDD REALAYGLRM AEHPGIVLTV 660
  661 FRFVVSPERV GEIVNVEVSN NNNENQSVKN LKSDEEIMSE IRKISSVDES VKFVEKQIEN 720
  721 AAVDVRSAIE EVRRSNLFLV GRMPGGEIAL AIRENSECPE LGPVGSLLIS PESSTKASVL 780
  781 VIQQYNGTGI APDLGAAETE VLTSTDKDSD