YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.81
Transmembrane Helix	7	28	0.92
Non-Cytoplasmic	29	34	0.91
Transmembrane Helix	35	58	0.89
Cytoplasmic	59	73	0.89
Transmembrane Helix	74	97	0.80
Non-Cytoplasmic	98	105	0.60
Transmembrane Helix	106	126	0.92
Cytoplasmic	127	134	0.73
Transmembrane Helix	135	154	0.87
Non-Cytoplasmic	155	166	0.82
Transmembrane Helix	167	188	0.90
Cytoplasmic	189	203	0.73
Transmembrane Helix	204	226	0.89
Non-Cytoplasmic	227	243	0.80
Transmembrane Helix	244	268	0.85
Cytoplasmic	269	273	0.64
Transmembrane Helix	274	295	0.87
Non-Cytoplasmic	296	303	0.64
Transmembrane Helix	304	320	0.78
Cytoplasmic	321	351	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKALVIINC IILAIGNCGG PLIMRLYFNN GGKRIWFSTF LETAGFPVIF IPLLFSYITR  60
   61 RRSNNVGDST SFFLIKPRLL IAAVIVGILS GFDNYLYAYG IAYLPVSTAA LIIASQLAFI 120
  121 AIFSFFMVKH KFTPFTINAV VLLTVGAAVL GMHTETDKPV HETHKQYITG FLITVAAAVM 180
  181 YAFILPLVEL AYQKAKQTMS YTLVLEFQLI LCLLASIVSV IGMFIAGDFK ALPKEAREFK 240
  241 LGEALFYVVA VFSAIIWQGF FLGAIGLIFS TSSLVSGIMI SVLLPITEVL AVIFYHEKFQ 300
  301 AEKGLSLALS LWGFVSYFYG EIKSGEDKRR IQQEESQETE QSSLSRPISE C