YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCX4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.85
Transmembrane Helix	15	32	0.93
Non-Cytoplasmic	33	133	0.89
Transmembrane Helix	134	156	0.83
Cytoplasmic	157	174	0.69
Transmembrane Helix	175	197	0.76
Non-Cytoplasmic	198	209	0.82
Transmembrane Helix	210	231	0.93
Cytoplasmic	232	240	0.97
Transmembrane Helix	241	262	0.91
Non-Cytoplasmic	263	268	0.72
Transmembrane Helix	269	289	0.93
Cytoplasmic	290	413	0.99
Transmembrane Helix	414	435	0.88
Non-Cytoplasmic	436	444	0.78
Transmembrane Helix	445	464	0.96
Cytoplasmic	465	474	0.90
Transmembrane Helix	475	495	0.95
Non-Cytoplasmic	496	502	0.79
Transmembrane Helix	503	526	0.82
Cytoplasmic	527	546	0.77
Transmembrane Helix	547	570	0.84
Non-Cytoplasmic	571	586	0.89
Transmembrane Helix	587	606	0.94
Cytoplasmic	607	615	0.87
Transmembrane Helix	616	640	0.84
Non-Cytoplasmic	641	644	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAVNFMYSS NNPKFRGIFN GLCAIILFIF FFDQSDIYRN PLLKNLSFVD SSGKFNRGFS  60
   61 QFTVPRRHLS EVDTNGSSGN SSLSGDSTVS CSGLHEHRGY ADQCEFLKSN PICSPDGFFD 120
  121 YLKFFYCSCR DFKILGYILL GVWLVALFYL LGNTAADYFC CSLEKLSKLL RLPPTVAGVT 180
  181 LLPLGNGAPD VFASIAAFVG SDKGEVGLNS VLGGAVFVTC VVVGIVSLCV ADKEVKIDKK 240
  241 CFIRDLSFFL FTLVALMVIL MVGKVTVGIA IAFVSIYVFY ASLVAANEIL RKHSRRLKLD 300
  301 SITPLLPMQG SVFSSPSVEE DIPMYSPLME LDTGEGPPRL HDSLPQWMWA TNVAIYSNHF 360
  361 AKANVHDEER PPWGWTEDGA EVESSLCSKI TSLLETPLTV PRRLTIPLIE EDSWSKTYAV 420
  421 ASVSLAPVLL SFLWSSQDDT SLQARIVAYF IGIAIGSTLG YLAFKNTEPD RPPQIYLIPW 480
  481 VLGGFIMSIV WFYMIANELV ALLVTFGGIY GINPSILGLT VLAWGNSMGD LVSNIALSMN 540
  541 GGDGVQIALS GCYAGPMFNT LVGLGMSMFL GAWSKSPETY MIPEDNSLFY TLGFLIFGLI 600
  601 WSLVMLPRNE MRPNKVMGIG LITLYLIFVT FRLSSAMGFI PWAS