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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|3152587, gi|7...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQVSNQGT MSQQNGNSQM QNLVGGGSAP ATGAGLGPSR VSPVDNDILK LRQAMRIRIF  60
   61 NILQQKQPSP ADEASKAKYM DVARRLEEGL FKIANTKEDY VNPSTLEPRL ASLIKGRQLN 120
  121 NYNQRHANSS SVGTMIPTPG LQHSGGNPNL MITSSGDATM AGSNNITTSA MNTGNLLNSG 180
  181 GMLGGNLSNG YQHSSSNFGL GSGGNMSSMS SQRNTGQMMP TPGFVNSSTN NNSNNGQSYL 240
  241 SVEASNNSGG FSTAPMMVPQ TQQQQLRQDI GGQNSRMLQN HGSQMGVGLR PGMQQKLSNV 300
  301 SNSSINGGVG MNAKSVDSGD GYGTNNSDPF GSGNLYGAVT SVGMMTNTQN ANTASFQAVS 360
  361 RTSSSLVSNP WNSLCMQQSS QILPVTSQSD MCTSVPQNSQ QIQQMLHPHS MASDSVNGFS 420
  421 NLSVGVKTES GMRGHWQSQS QEHTQMSNSM SNERHIQEDF RQRMSGTDEA QPNNMSGGSI 480
  481 IGQNRVSTTS ESLNPQNPTA TTCRNGNGNR DPRFKNQQKW LLFLRHARHC KAPEGKCPDR 540
  541 NCVTVQKLWK HMDSCAAPQC SYPRCLPTKT LINHHRSCKE PNCPVCIPVK AYLQQQANAR 600
  601 SLARLKNETD AARSVNGGGI SSDAVQTSAG AKSCTSPGAD ISGHLQPSLK RLKVEQSSQP 660
  661 VDVETESCKS SVVSVTEAQS SQYAERKDHK HSDVRAPSKY FEVKAEVSDF SVQTRPGFKD 720
  721 TKIGIAENIP KQRPVSQPDK QDLSDVSPMQ ETTKVEKEPE SLKKENLAES TEHTSKSGKP 780
  781 EIKGVSLTEL FTPEQVREHI RGLRQWVGQS KAKAEKNQAM EHSMSENSCQ LCAVEKLTFE 840
  841 PPPIYCTPCG ARIKRNAMYY TVGAGDTRHY FCIPCYNESR GDTILAEGTP MPKARLEKKK 900
  901 NDEETEEWWV QCDKCEAWQH QICALFNGRR NDGGQAEYTC PYCFIAEVEQ SKRKPLPQSA 960
  961 VLGAKDLPRT ILSDHIEQRL FKRLKQERTE RARAQGKSYD EIPTAESLVI RVVSSVDKKL1020
 1021 EVKPRFLEIF REDSYPTEFA YKSKVVLLFQ KIEGVEVCLF GMYVQEFGSE CAFPNQRRVY1080
 1081 LSYLDSVKYF RPEVRSYNGE ALRTFVYHEI LIGYLEYCKL RGFTSCYIWA CPPLKGEDYI1140
 1141 LYCHPEIQKT PKSDKLREWY LAMLRKASKE GIVAETINLY DHFFMQTGEC RAKVTAARLP1200
 1201 YFDGDYWPGA AEDLIYQMSQ EEDGRKGNKK GMLKKTITKR ALKASGQTDL SGNASKDLLL1260
 1261 MHRVIFSFYE YCFLFVYIFF SFVLFFLLII FTCFTDSQLG ETIHPMKEDF IMVEIMDIPA1320
 1321 DTRDKDEILE SEFFDTRQAF LSLCQGNHYQ YDTLRRAKHS SMMVLYHLHN PTAPAFVTTC1380
 1381 NACHLDIETG QGWRCEVCPD YDVCNACFSR DGGVNHPHKL TNHPSLADQN AQNKEARQLR1440
 1441 VLQLRKMLDL LVHASQCRSA HCQYPNCRKV KGLFRHGINC KVRASGGCVL CKKMWYLLQL1500
 1501 HARACKESEC HVPRCR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle