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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB24B_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRVSQLQLC RTSLSYRLRS GYHHHHHLHH SFFKLIKRNS ILESPPTNAS HQSPSPITPM  60
   61 VNARVMFFST STSAPHPEKI NRTSSENILR MISSYLWMKD NPKLCFRVIS AFACLVGAKF 120
  121 LNVQVPFLFK VAIDWLSSSS FVDSNPYLVA AFATPSSVLI GYGIARSGSS AFNELRTSVF 180
  181 SKVALRTIRT ISRKVLSRLH DLDLRYHLNR DTGALNRIID RGSRAINTIL SAMVFNIMPT 240
  241 ILEISMVSCI LAYKFGAVYA LITCLSVGSY IAFTLAMTQW RIKIRKAMNE AENDASTRAI 300
  301 DSLINYETVK YFNNEDYEAR KYDQLHENYE DAALQSRKSF ALLNFGQSFI FSTALSTAMV 360
  361 LCSQGIMNGQ MTVGDLVMVN GLLFQLSLPL YFLGVVYSDT VQGLVDMKSM FKFLEERSDI 420
  421 GDKDIDRKLP PLVLKGGSIS FENVHFSYLP ERKILDGISF EVPAGKSVAI VGSSGSGKST 480
  481 ILRMIFRFFD VDSGNVKIDG QDIKEVRLES LRSSIGVVPQ DTVLFNDTIF HNIHYGNLSA 540
  541 TEEEVYNAAR RAAIHDTIMK FPDKYSTAVG ERGLMLSGGE KQRVALARAF LKSPAILLCD 600
  601 EATSALDSKT EAEIMKTLRS LASNRTCIFI AHRLTTAMQC DEILVMEKGK VVEKGTHEVL 660
  661 LGKSGRYAKL WTQQNSKLEV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle