YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFSNSLVG ILNFFVFLLS VPILSTGIWL SLKATTQCER FLDKPMIALG VFLMIIAIAG  60
   61 VVGSCCRVTW LLWSYLFVMF FLILIVLCFT IFAFVVTSKG SGETIQGKAY KEYRLEAYSD 120
  121 WLQRRVNNAK HWNSIRSCLY ESKFCYNLEL VTANHTVSDF YKEDLTAFES GCCKPSNDCD 180
  181 FTYITSTTWN KTSGTHKNSD CQLWDNEKHK LCYNCKACKA GFLDNLKAAW KRVAIVNIIF 240
  241 LVLLVVVYAM GCCAFRNNKE DRYGRSNGFN NS

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.76
Transmembrane Helix	8	32	0.87
Cytoplasmic	33	45	0.71
Transmembrane Helix	46	71	0.82
Non-Cytoplasmic	72	75	0.54
Transmembrane Helix	76	97	0.92
Cytoplasmic	98	232	0.77
Transmembrane Helix	233	255	0.86
Non-Cytoplasmic	256	272	0.76