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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SDP1_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.37
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDISNEASVD PFSIGPSSIM GRTIAFRVLF CRSMSQLRRD LFRFLLHWFL RFKLTVSPFV  60
   61 SWFHPRNPQG ILAVVTIIAF VLKRYTNVKI KAEMAYRRKF WRNMMRTALT YEEWAHAAKM 120
  121 LEKETPKMNE SDLYDEELVK NKLQELRHRR QEGSLRDIMF CMRADLVRNL GNMCNSELHK 180
  181 GRLQVPRHIK EYIDEVSTQL RMVCNSDSEE LSLEEKLSFM HETRHAFGRT ALLLSGGASL 240
  241 GAFHVGVVRT LVEHKLLPRI IAGSSVGSII CAVVASRSWP ELQSFFENSL HSLQFFDQLG 300
  301 GVFSIVKRVM TQGALHDIRQ LQCMLRNLTS NLTFQEAYDM TGRILGITVC SPRKHEPPRC 360
  361 LNYLTSPHVV IWSAVTASCA FPGLFEAQEL MAKDRSGEIV PYHPPFNLDP EVGTKSSSGR 420
  421 RWRDGSLEVD LPMMQLKELF NVNHFIVSQA NPHIAPLLRL KDLVRAYGGR FAAKLAHLVE 480
  481 MEVKHRCNQV LELGFPLGGL AKLFAQEWEG DVTVVMPATL AQYSKIIQNP THVELQKAAN 540
  541 QGRRCTWEKL SAIKSNCGIE LALDDSVAIL NHMRRLKKSA ERAATATSSS HHGLASTTRF 600
  601 NASRRIPSWN VLARENSTGS LDDLVTDNNL HASSGRNLSD SETESVELSS WTRTGGPLMR 660
  661 TASANKFIDF VQSLDIDIAL VRGFSSSPNS PAVPPGGSFT PSPRSIAAHS DIESNSNSNN 720
  721 LGTSTSSITV TEGDLLQPER TSNGFVLNVV KRENLGMPSI GNQNTELPES VQLDIPEKEM 780
  781 DCSSVSEHEE DDNDNEEEHN GSSLVTVSSE DSGLQEPVSG SVIDA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle